Glyma13g18450 - SoyBase

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Report for Sequence Feature Glyma13g18450

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22109247
stop:	22113254
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g18450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03880	AT	Annotation by Michelle Graham. TAIR10: cruciferin 2 \| chr1:985786-987916 FORWARD LENGTH=455	SoyBase	E_val: 4.00E-82	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010431	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed maturation	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0071215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_Q39922	UniRef	Annotation by Michelle Graham. Best UniRef hit: Gy5 protein n=4 Tax=Glycine RepID=Q39922_GLYSO	SoyBase	E_val: 0	ISS
UniRef100_Q39922	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gy5 protein n=4 Tax=Glycine RepID=Q39922_GLYSO	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma13g18450

Locus	Gene Symbol	Protein Name
	Gy5	Glycinin gene 5
	glycinin A3B4	glycinin A3B4 subunit

Expression Patterns of Glyma13g18450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18450

Paralog	Evidence	Comments
Glyma10g04280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g123500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g18450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g18450

Limit To All Plant Sequences

>Glyma13g18450.2   sequence type=CDS   gene model=Glyma13g18450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGCCCTTCTTCACTCTCTCTCTTTCTTCCCTTTGCTTGCTACTCTTGTCGAGTGCATGCTTTGCTATTACCTCCAGCAAGTTCAACGAGTGCCAACTCAACAACCTCAACGCGTTGGAACCCGACCACCGCGTTGAGTCCGAAGGTGGTCTTATTGAAACATGGAACTCTCAACACCCTGAGCTGCAATGCGCCGGTGTCACTGTTTCCAAACGCACCCTCAACCGCAACGGCCTCCACTTGCCATCTTACTCACCTTATCCCCAAATGATCATTGTCGTTCAAGGGAAGGGAGCAATTGGATTTGCATTTCCGGGATGTCCTGAGACGTTTGAGAAGCCACAACAGCAATCAAGCAGAAGAGGCTCAAGGTCGCAGCAGCAACTACAAGACAGTCACCAGAAGATTCGTCACTTCAATGAAGGAGACGTACTAGTGATTCCTCCTGGTGTTCCTTACTGGACCTATAACACTGGCGATGAACCAGTTGTTGCCATCAGTCTTCTTGACACCTCCAACTTCAACAATCAGCTTGATCAAAACCCCAGAGTATTTTACCTTGCTGGGAACCCAGATATAGAGCACCCAGAGACCATGCAACAACAGCAGCAGCAGAAGAGTCATGGTGGACGCAAGCAGGGGCAACACCAGCAGCAGGAGGAAGAAGGTGGCAGTGTGCTCAGTGGCTTCAGCAAACATTTCTTAGCACAATCCTTCAACACCAACGAGGACACAGCTGAGAAACTTCGGTCTCCAGATGACGAAAGGAAGCAGATCGTGACAGTGGAGGGAGGCCTCAGCGTTATCAGCCCCAAGTGGCAAGAACAAGAAGACGAAGACGAAGATGAAGACGAAGAATATGAACAAACTCCCTCTTATCCTCCACGACGACCAAGCCATGGAAAGCATGAAGATGACGAGGACGAGGACGAAGAAGAAGATCAACCTCGTCCTGATCACCCTCCACAGCGACCAAGCAGGCCCGAACAACAAGAACCACGTGGAAGAGGATGTCAGACTAGAAATGGGGTTGAGGAAAATATTTGCACCATGAAGCTTCACGAGAACATTGCTCGCCCTTCACGTGCTGACTTCTACAACCCAAAAGCTGGTCGCATTAGCACCCTCAACAGTCTCACCCTCCCAGCCCTCCGCCAATTCGGACTCAGTGCCCAATATGTTGTCCTCTACAGGAATGGAATTTACTCTCCACATTGGAACTTGAACGCGAACAGTGTGATCTATGTGACTCGAGGGAAAGGAAGAGTTAGAGTGGTGAACTGCCAAGGGAATGCAGTGTTCGACGGTGAGCTAAGGAGGGGACAATTGCTAGTGGTGCCGCAGAACTTTGTGGTGGCTGAGCAAGGGGGAGAACAAGGATTGGAATACGTAGTGTTCAAGACACACCACAACGCCGTGAGCAGCTACATTAAGGATGTGTTTAGGGCAATCCCTTCGGAGAAAGTGTAA

Predicted protein sequences of Glyma13g18450

Limit To All Plant Sequences

>Glyma13g18450.2   sequence type=predicted peptide   gene model=Glyma13g18450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKPFFTLSLSSLCLLLLSSACFAITSSKFNECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQEDEDEDEDEEYEQTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQEPRGRGCQTRNGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEKV*

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